CRC Wiki
CRC Wiki
Log in

PLINK

From CRC Wiki

General Description

PLINK is an open-source whole genome association analysis toolset, designed to perform a range of basic, large-scale analyses in a computationally efficient manner.

The focus of PLINK is purely on analysis of genotype/phenotype data, so there is no support for steps prior to this (e.g. study design and planning, generating genotype or CNV calls from raw data). Through integration with gPLINK and Haploview, there is some support for the subsequent visualization, annotation and storage of results.

Basic Usage

 module load plink

Useful Options


Further Information

See the official website: PLINK