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Installed Applications

From CRC Wiki

INSTALLED PROGRAMS AND APPLICATIONS AT THE CRC


Contents

Molecular Dynamics

ADF/BAND

Amber

CP2K

CPMD

Desmond

Gaussian

Gaussview

GOLD

GROMACS

LAMMPS

Molpro

NAMD

OpenMD

OpenMM

Rosetta and PyRosetta

Schrodinger

  Maestro
  Jaguar
  MacroModel

TINKER

Physics

Quantum Espresso

QuantumWise

VASP

GPAW

ASE

VMD

Chemistry

GAMESS

NWChem

ORCA

Q-Chem

TeraChem

Towhee

Biology

Bio Software

  Bismark
  Bowtie
  BWA
  Cutadapt
  FastQC
  Gatk
  HTSeq
  Picardtools
  Samtools
  Tophat
  Trimmomatic
  Trinity
  ---
  BWA version 0.7.12  
  Cutadapt version 1.8.3

BioPerl

DNASTAR

PLINK

Math and Statistics

AMPL

Bertini

IMSL

Maple

Mathematica

Matlab

NAG

SAGE

Mplus

OpenBUGS

R

  RStudio

RCOSA

SAS

Stata

Dakota

Econimic Models

DYNARE

Weather and Climate Modeling

WRF

Engineering, Multiphysics and CFD

Abaqus

Accelrys Material Studio

ADINA

Altair HyperWorks

ANSYS (Ansoft) HFSS

ANSYS Fluent

AutoDesk Maya

COBALT

COMSOL

Gerris

LS-DYNA

MSC Nastran/Patran/Marc

OpenFOAM

ProEngineer Wildfire

SIMICS

SpinFlow3D

Geology

ArcGIS

GMT

OpenSees

Compilers & Development Tools

Allinea DDT

Chapel

CUDA

Intel Compiler Suite

Portland Group Compiler (PGI)

GCC Compiler Suite

BOOST Library

Scalasca

Perl

Python

MemoryScape

Valgrind

Marmot

IPM

TAU

Parallel Computing Tools

MPICH

MPICH2

MVAPICH2

Open MPI

OpenMP

PETSc

Publishing/Data Management/File Sys/Tools

FrameMaker

OpenAFS

I/O Libraries

HDF5

NetCDF

Visualization

Interactive Data Language (IDL)

P4vasp

ParaView

QT

Tecplot 360

XMGrace

Miscellaneous

Chimera

Cmake

cmaq

DDD

efdc

gcta

git

Graphviz

ibamr

ioapi

ncl

nco

netgen

open64

openbabel

papi

scons

slepc

upc