Cutadapt version 1.83
cutadapt version 1.8.3 Copyright (C) 2010-2015 Marcel Martin <email@example.com> cutadapt removes adapter sequences from high-throughput sequencing reads. Usage: cutadapt -a ADAPTER [options] [-o output.fastq] input.fastq For paired-end reads: cutadapt -a ADAPT1 -A ADAPT2 [options] -o out1.fastq -p out2.fastq in1.fastq in2.fastq Replace "ADAPTER" with the actual sequence of your 3' adapter. IUPAC wildcard characters are supported. The reverse complement is *not* automatically searched. All reads from input.fastq will be written to output.fastq with the adapter sequence removed. Adapter matching is error-tolerant. Multiple adapter sequences can be given (use further -a options), but only the best-matching adapter will be removed. Input may also be in FASTA format. Compressed input and output is supported and auto-detected from the file name (.gz, .xz, .bz2). Use the file name '-' for standard input/output. Without the -o option, output is sent to standard output. Some other available features are: * Various other adapter types (5' adapters, "mixed" 5'/3' adapters etc.) * Trimming a fixed number of bases * Quality trimming * Trimming colorspace reads * Filtering reads by various criteria Use "cutadapt --help" to see all command-line options. See http://cutadapt.readthedocs.org/ for full documentation.
See the official website: [http:// ]